Towards semantic interoperability of protein data sources

Sidhu, Amandeep; Dillon, Tharam S.; Chang, Elizabeth

doi:10.1007/11915072_90

Access Status

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Authors

Sidhu, Amandeep

Dillon, Tharam S.

Chang, Elizabeth

Date

2006

Type

Conference Paper

Metadata

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Citation

Sidhu, Amandeep and Dillon, Tharam and Chang, Elizabeth. 2006. : Towards semantic interoperability of protein data sources, in Meersman, R. and Tari, Z. and Herrero, P. (ed), 2nd IFIP WG 2.12 & WG 12.4 International Workshop on Web Semantics (SWWS) in conjunction with OTM 2006, Oct 29 2006, pp. 1835-1843. Montpellier, France: Springer-Verlag.

Source Title

Lecture Notes in Computer Science (LNCS-4278) - On the Move to Meaningful Internet Systems 2006: OTM 2006 Workshops

Source Conference

2nd IFIP WG 2.12 & WG 12.4 International Workshop on Web Semantics (SWWS) in conjunction with OTM 2006

DOI

10.1007/11915072_90

Faculty

Curtin Business School

School

Centre for Extended Enterprises and Business Intelligence

URI

http://hdl.handle.net/20.500.11937/18930

Collection

Curtin Research Publications

Abstract

Several approaches for data interoperation identified by Karp have been implemented for biological databases. We extend Karp's approach for interoperation not only to protein databases but also to knowledge bases and other information sources. This paper outlines algebra for protein data source composition based on our existing work of Protein Ontology (PO). In this paper we consider the case of establishing correspondence between various protein data sources using semantic relationships over the conceptual framework of PO. Here we provide specific set of relationships over PO framework to cover data semantics for integrating data information from diverse protein data sources. These relationships help in defining semantic query algebra for PO to efficiently reason and query the instance store.