NetRaVE: Constructing dependency networks using sparse linear regression

Phatak, Aloke; Kiiveri, H.; Clemmensen, L.; Wilson, W.

doi:http://doi.org/10.1093/bioinformatics/btq168

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Authors

Phatak, Aloke

Kiiveri, H.

Clemmensen, L.

Wilson, W.

Date

2010

Type

Journal Article

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Abstract

Summary: NetRaVE is a small suite of R functions for generating dependency networks using sparse regression methods. Such networks provide an alternative to interpreting 'top n lists' of genes arising out of an analysis of microarray data, and they provide a means of organizing and visualizing the resulting information in a manner that may suggest relationships between genes. Availability: NetRaVE is freely available for academic use and has been tested in R 2.10.1 under Windows XP, Linux and Mac OS X. Contact: harri.kiiveri@csiro.au. Supplementary information: Supplementary data are available at Bioinformatics online. © The Author 2010. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oxfordjournals.org.

Citation

Phatak, A. and Kiiveri, H. and Clemmensen, L. and Wilson, W. 2010. NetRaVE: Constructing dependency networks using sparse linear regression. Bioinformatics. 26 (12): pp. 1576-1577.

Source Title

Bioinformatics

URI

http://hdl.handle.net/20.500.11937/26062

DOI

http://doi.org/10.1093/bioinformatics/btq168

Department

Department of Mathematics and Statistics

Collections

Research Papers