Biogem: An effective tool-based approach for scaling up open source software development in bioinformatics

Bonnal, R.; Aerts, J.; Githinji, G.; Goto, N.; Maclean, D.; Miller, C.; Mishima, H.; Pagani, M.; Ramirez-gonzalez, R.; Smant, G.; Strozzi, F.; Syme, Robert; Vos, R.; Wennblom, T.; Woodcroft, B.; Katayama, T.; Prins, P.

doi:http://doi.org/10.1093/bioinformatics/bts080

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Authors

Bonnal, R.

Aerts, J.

Githinji, G.

Goto, N.

Maclean, D.

Miller, C.

Mishima, H.

Pagani, M.

Ramirez-gonzalez, R.

Smant, G.

Strozzi, F.

Syme, Robert

Vos, R.

Wennblom, T.

Woodcroft, B.

Katayama, T.

Prins, P.

Date

2012

Type

Journal Article

Metadata

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Abstract

Summary: Biogem provides a software development environment for the Ruby programming language, which encourages community-based software development for bioinformatics while lowering the barrier to entry and encouraging best practices. Biogem, with its targeted modular and decentralized approach, software generator, tools and tight web integration, is an improved general model for scaling up collaborative open source software development in bioinformatics. © The Author(s) 2012. Published by Oxford University Press.

Citation

Bonnal, R. and Aerts, J. and Githinji, G. and Goto, N. and Maclean, D. and Miller, C. and Mishima, H. et al. 2012. Biogem: An effective tool-based approach for scaling up open source software development in bioinformatics. Bioinformatics. 28 (7): pp. 1035-1037.

Source Title

Bioinformatics

URI

http://hdl.handle.net/20.500.11937/43400

DOI

http://doi.org/10.1093/bioinformatics/bts080

Department

Centre for Crop Disease Management

Collections

Research Papers