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Ontological foundation for protein data models

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Open access
Authors
Dillon, Tharam S.
Sidhu, Amandeep
Chang, Elizabeth
Date
2005
Type
Conference Paper

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Citation
Dillon, T.S. and Sidhu, A. and Chang, E. 2005. Ontological foundation for protein data models, in Herrero, P. and Meersman, R. and Tari, Z. (ed), On the Move to Meaningful Internet Systems 2005: OTM 2005 Workshop, Oct 31 2005, pp. 916-925. Agia Napa, Cyprus: Springer-Verlag.
Source Title
Lecture Notes in Computer Science: On the Move to Meaningful Internet Systems 2005: OTM Workshops: OTM Confederated International Workshops and Posters, AWeSOMe, CAMS, GADA, MIOS+INTEROP, ORM, PhDS, SeBGIS, SWWS, and WOSE 2005
Source Conference
On the Move to Meaningful Internet Systems 2005: OTM 2005 Workshop
DOI
School
Centre for Extended Enterprises and Business Intelligence
Remarks

The final publication is available at Springer via http://dx.doi.org/10.1007/11575863_113

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Abstract

In this paper, we proposed a Protein Ontology to integrate protein data and information from various Protein Data Sources. Protein Ontology provides the technical and scientific infrastructure and knowledge to allow description and analysis of relationships between various proteins. Protein Ontology uses relevant protein data sources of information like PDB, SCOP, and OMIM. Protein Ontology describes: Protein Sequence and Structure Information, Protein Folding Process, Cellular Functions of Proteins, Molecular Bindings internal and external to Proteins, and Constraints affecting the Final Protein Conformation. We also created a database of 10 Major Prion Proteins available in various Protein data sources, based on the vocabulary provided by Protein Ontology. Details about Protein Ontology are available online athttp://www.proteinontology.info/.