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    User-defined view automation of genomic databases

    Access Status
    Fulltext not available
    Authors
    Robinson, A.
    Rahayau, W.
    Herd, S.
    Dillon, Tharam S.
    Date
    2005
    Type
    Conference Paper
    
    Metadata
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    Citation
    Robinson, A. and Rahayau, W. and Herd, S. and Dillon, T.S. 2005. User-defined view automation of genomic databases, in Lorie M. Liebrock (ed), The 20th Annual ACM Symposium on Applied Computing, Mar 13 2005, pp. 671-675. Santa Fe, New Mexico: ACM.
    Source Title
    Proceedings of the 2005 ACM symposium on applied computing
    Source Conference
    The 20th Annual ACM Symposium on Applied Computing
    DOI
    10.1145/1066677.1066829
    Additional URLs
    http://doi.acm.org/10.1145/1066677.1066829
    ISBN
    1581139640
    URI
    http://hdl.handle.net/20.500.11937/46465
    Collection
    • Curtin Research Publications
    Abstract

    This paper presents a solution to the problem of creating a subset database from the public genome databases, also known as a database view. While the techniques to generate views are well established already in the database system there are still some problems found where applying this technique in the genome database environment. The main problems that exist in the current methods of view creation are missing relevant results, returning irrelevant results and view creation processes are generally very time consuming for the user. The solution presented within provides an automated approach aimed at reducing the time needed to create a view, which is usually done by hand. The solution improves the searching method needed for view creation by the addition of two extra phases; the first, expanding the keyword search so that it captures all relevant results and second, a filtering phase to remove all the extra irrelevant results. The whole process is done in the background so that the user isn’t required to spend much time fixing the results of inadequate search tools.

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