Recent submissions 

Curtin Research Publications: Recent submissions

Now showing items 281-290 of 70557

    • Complete chloroplast genome sequence of an engelmann spruce (Picea engelmannii, genotype Se404-851) from Western Canada
      Lin, D.; Coombe, L.; Jackman, S.D.; Gagalova, Kristina ; Warren, R.L.; Hammond, S.A.; McDonald, H.; Kirk, H.; Pandoh, P.; Zhao, Y.; Moore, R.A.; Mungall, A.J.; Ritland, C.; Doerksen, T.; Jaquish, B.; Bousquet, J.; Jones, S.J.M.; Bohlmann, J.; Birol, I. (2019)
      Engelmann spruce (Picea engelmannii) is a conifer found primarily on the west coast of North America. Here, we present the complete chloroplast genome sequence of Picea engelmannii genotype Se404-851. This chloroplast ...
    • Skewed X-inactivation is common in the general female population
      Shvetsova, E.; Sofronova, A.; Monajemi, R.; Gagalova, Kristina ; Draisma, H.H.M.; White, S.J.; Santen, G.W.E.; Chuva de Sousa Lopes, S.M.; Heijmans, B.T.; van Meurs, J.; Jansen, R.; Franke, L.; Kiełbasa, S.M.; den Dunnen, J.T.; ‘t Hoen, P.A.C.; Boomsma, D.I.; Pool, R.; van Dongen, J.; Hottenga, J.J.; van Greevenbroek, M.M.; Stehouwer, C.D.; van der Kallen, C.J.; Schalkwijk, C.G.; Wijmenga, C.; Zhernakova, S.; Tigchelaar, E.F.; Slagboom, P.E.; Beekman, M.; Deelen, J.; van Heemst, D.; Veldink, J.H.; van den Berg, L.H.; van Duijn, C.M.; Hofman, B.A.; Uitterlinden, A.G.; Jhamai, P.M.; Verbiest, M.; Suchiman, H.E.D.; Verkerk, M.; van der Breggen, R.; van Rooij, J.; Lakenberg, N.; Mei, H.; Bot, J.; Zhernakova, D.V.; van ’t Hof, P.; Deelen, P.; Nooren, I.; Moed, M.; Vermaat, M.; Luijk, R.; Jan Bonder, M.; van Iterson, M.; van Dijk, F.; van Galen, M.; Arindrarto, W.; Swertz, M.A.; van Zwet, E.W.; Isaacs, A.; Francioli, L.; Menelaou, A.; Pulit, S.; Palamara, P.; Elbers, C.; Neerincx, P.; Ye, K.; Guryev, V.; Kloosterman, W.; Abdellaoui, A.; van Leeuwen, E.; van Oven, M.; Li, M.; Laros, J.; Karssen, L.; Kanterakis, A.; Amin, N.; Hottenga, J.; Lameijer, E.; Kattenberg, M.; Dijkstra, M.; Byelas, H.; van Setten, J.; van Schaik, B.; Nijman, I.; Renkens, I.; Marschall, T.; Schönhuth, A.; Hehir-Kwa, J.; Handsaker, R.; Polak, P.; Sohail, M.; Vuzman, D. (2019)
      X-inactivation is a well-established dosage compensation mechanism ensuring that X-chromosomal genes are expressed at comparable levels in males and females. Skewed X-inactivation is often explained by negative selection ...
    • Complete Chloroplast Genome Sequence of a White Spruce (Picea glauca, Genotype WS77111) from Eastern Canada
      Lin, D.; Coombe, L.; Jackman, S.D.; Gagalova, Kristina ; Warren, R.L.; Austin Hammond, S.; Pandoh, P.; Zhao, Y.; Moore, R.A.; Mungall, A.J.; Ritland, C.; Jaquish, B.; Isabel, N.; Bousquet, J.; Jones, S.J.M.; Bohlmann, J.; Birol, I. (2019)
      Here, we present the complete chloroplast genome sequence of white spruce (Picea glauca, genotype WS77111), a coniferous tree widespread in the boreal forests of North America. This sequence contributes to genomic and ...
    • RNA-Seq in 296 phased trios provides a high-resolution map of genomic imprinting
      Jadhav, B.; Monajemi, R.; Gagalova, Kristina ; Ho, D.; Draisma, H.H.M.; Van De Wiel, M.A.; Franke, L.; Heijmans, B.T.; Van Meurs, J.; Jansen, R.; T'Hoen, P.A.C.; Sharp, A.J.; Kiełbasa, S.M. (2019)
      Background: Identification of imprinted genes, demonstrating a consistent preference towards the paternal or maternal allelic expression, is important for the understanding of gene expression regulation during embryonic ...
    • Induction of interferon-stimulated genes and cellular stress pathways by morpholinos in zebrafish
      Lai, J.K.H.; Gagalova, Kristina ; Kuenne, C.; El-Brolosy, M.A.; Stainier, D.Y.R. (2019)
      The phenotypes caused by morpholino-mediated interference of gene function in zebrafish are often not observed in the corresponding mutant(s). We took advantage of the availability of a relatively large collection of ...
    • What you need to know before implementing a clinical research data warehouse: Comparative review of integrated data repositories in health care institutions
      Gagalova, Kristina ; Angelica Leon Elizalde, M.; Portales-Casamar, E.; Görges, M. (2020)
      Background: Integrated data repositories (IDRs), also referred to as clinical data warehouses, are platforms used for the integration of several data sources through specialized analytical tools that facilitate data ...
    • RNA-Scoop: interactive visualization of transcripts in single-cell transcriptomes
      Stephenson, M.; Nip, K.M.; Hafezqorani, S.; Gagalova, Kristina ; Yang, C.; Warren, R.L.; Birol, I. (2021)
      Recent advances in single-cell RNA sequencing technologies have made detection of transcripts in single cells possible. The level of resolution provided by these technologies can be used to study changes in transcript ...
    • The genome of the forest insect pest Pissodes strobi reveals genome expansion and evidence of a Wolbachia endosymbiont
      Gagalova, Kristina K. ; Whitehill, J.G.A.; Culibrk, L.; Lin, D.; Levesque-Tremblay, V.; Keeling, C.I.; Coombe, L.; Yuen, M.M.S.; Birol, I.; Bohlmann, J.; Jones, S.J.M. (2022)
      The highly diverse insect family of true weevils, Curculionidae, includes many agricultural and forest pests. Pissodes strobi, commonly known as the spruce weevil or white pine weevil, is a major pest of spruce and pine ...
    • Spruce giga-genomes: structurally similar yet distinctive with differentially expanding gene families and rapidly evolving genes
      Gagalova, Kristina K. ; Warren, R.L.; Coombe, L.; Wong, J.; Nip, K.M.; Yuen, M.M.S.; Whitehill, J.G.A.; Celedon, J.M.; Ritland, C.; Taylor, G.A.; Cheng, D.; Plettner, P.; Hammond, S.A.; Mohamadi, H.; Zhao, Y.; Moore, R.A.; Mungall, A.J.; Boyle, B.; Laroche, J.; Cottrell, J.; Mackay, J.J.; Lamothe, M.; Gérardi, S.; Isabel, N.; Pavy, N.; Jones, S.J.M.; Bohlmann, J.; Bousquet, J.; Birol, I. (2022)
      Spruces (Picea spp.) are coniferous trees widespread in boreal and mountainous forests of the northern hemisphere, with large economic significance and enormous contributions to global carbon sequestration. Spruces harbor ...
    • Reference-free assembly of long-read transcriptome sequencing data with RNA-Bloom2
      Nip, K.M.; Hafezqorani, S.; Gagalova, Kristina ; Chiu, R.; Yang, C.; Warren, R.L.; Birol, I. (2023)
      Long-read sequencing technologies have improved significantly since their emergence. Their read lengths, potentially spanning entire transcripts, is advantageous for reconstructing transcriptomes. Existing long-read ...