Next-generation re-sequencing as a tool for rapid bioinformatic screening of presence and absence of genes and accessory chromosomes across isolates of Zymoseptoria tritici.
dc.contributor.author | McDonald, M. | |
dc.contributor.author | Williams, A. | |
dc.contributor.author | Milgate, A. | |
dc.contributor.author | Pattemore, J. | |
dc.contributor.author | Solomon, P. | |
dc.contributor.author | Hane, James | |
dc.date.accessioned | 2017-01-30T11:15:22Z | |
dc.date.available | 2017-01-30T11:15:22Z | |
dc.date.created | 2015-06-24T20:00:41Z | |
dc.date.issued | 2015 | |
dc.identifier.citation | McDonald, M. and Williams, A. and Milgate, A. and Pattemore, J. and Solomon, P. and Hane, J. 2015. Next-generation re-sequencing as a tool for rapid bioinformatic screening of presence and absence of genes and accessory chromosomes across isolates of Zymoseptoria tritici. Fungal Genetics and Biology. 79: pp. 71-75. | |
dc.identifier.uri | http://hdl.handle.net/20.500.11937/9842 | |
dc.identifier.doi | 10.1016/j.fgb.2015.04.012 | |
dc.description.abstract |
The wheat pathogen Zymoseptoria tritici possesses a large number of accessory chromosomes that may be present or absent in its genome. The genome of the reference isolate IPO323 has been assembled to a very high standard and contains 21 full length chromosome sequences, 8 of which represent accessory chromosomes. The IPO323 reference, when combined with low-cost next-generation sequencing and bioinformatics, can be used as a powerful tool to assess the presence or absence of accessory chromosomes. We present an outline of a range of bioinformatics techniques that can be applied to the analysis of presence–absence variation among accessory chromosomes across 13 novel isolates of Z. tritici. | |
dc.publisher | Academic Press | |
dc.subject | Accessory chromosome | |
dc.subject | Zymoseptoria tritici | |
dc.subject | Presence–absence variation | |
dc.subject | Next-generation sequencing | |
dc.subject | Comparative genomics | |
dc.title | Next-generation re-sequencing as a tool for rapid bioinformatic screening of presence and absence of genes and accessory chromosomes across isolates of Zymoseptoria tritici. | |
dc.type | Journal Article | |
dcterms.source.volume | 79 | |
dcterms.source.startPage | 71 | |
dcterms.source.endPage | 75 | |
dcterms.source.issn | 1087-1845 | |
dcterms.source.title | Fungal Genetics and Biology | |
curtin.department | Department of Environment and Agriculture | |
curtin.accessStatus | Open access via publisher |